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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6480780_6481575_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6480780 - 6481575
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATACT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TATTCTTTGATA
Flanking Amino Acid:
KCCNHPYLIKGAEEKILGEF
Intron Amino Acid Position:
1149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
79.5
33.5
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
75.3
0.57
1
72.9
37.1
Minor 5ss
43.8
-0.7
2.7
60.9
43.5
Minor BPS
75.6
0.8
1
78.77
31

Associated Gene:

Gene:
CHD9
Ensembl Gene ID:
ENSAPLG00000002826
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002906
6456112 - 6530331
74220