About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6484970_6486315_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6484970 - 6486315
Intron Length:
1346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTCA
5'SS Class:
major
3'SS Sequence:
ATTTTACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTGACCTTAATA
Flanking Amino Acid:
LNWLLFNWYNRRNCILADEM
Intron Amino Acid Position:
875

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
72.7
32.4
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
85.6
0.8
0.8
82.6
33.4
Minor 5ss
45.9
-0.4
2.5
59.3
45.3
Minor BPS
77.8
0.87
1.2
80.12
36

Associated Gene:

Gene:
CHD9
Ensembl Gene ID:
ENSAPLG00000002826
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002906
6456112 - 6530331
74220