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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6486438_6488593_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6486438 - 6488593
Intron Length:
2156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAATTA
5'SS Class:
major
3'SS Sequence:
TTTTCCCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTCCCTTGAAG
Flanking Amino Acid:
QASRPDSRRLDRPPPNSWKK
Intron Amino Acid Position:
835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
72.9
32.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
78.8
0.65
1
79.9
25.9
Minor 5ss
41
-1
3.2
52.8
46.3
Minor BPS
69
0.45
1.5
73.82
38.1

Associated Gene:

Gene:
CHD9
Ensembl Gene ID:
ENSAPLG00000002826
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002906
6456112 - 6530331
74220