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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6488732_6490121_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6488732 - 6490121
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
ACATTCAGAATT
Flanking Amino Acid:
SLCEDKDTGEPVIYYLVKWC
Intron Amino Acid Position:
789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
48.8
-0
1.7
64.77
39.7

Associated Gene:

Gene:
CHD9
Ensembl Gene ID:
ENSAPLG00000002826
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002906
6456112 - 6530331
74220