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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6490209_6490738_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6490209 - 6490738
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTATTAATC
Flanking Amino Acid:
QAQRAHFFADMEEEPFNPDY
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.4
0.68
0.9
73.9
35.4
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
69.3
0.58
1.5
77.59
31.5

Associated Gene:

Gene:
CHD9
Ensembl Gene ID:
ENSAPLG00000002826
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002906
6456112 - 6530331
74220