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Intron Name: Anas_platyrhynchos_platyrhynchos_12_6493165_6496654_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6493165 - 6496654

Intron Length:

3490

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

CTACTCCATGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TTTTATTCTACT

Flanking Amino Acid:

QRPVKDEDSQKRRSNRQVKR

Intron Amino Acid Position:

630

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.9

81.8

38.5

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

72.3

0.5

0.9

66.3

34.5

Minor 5ss

41.1

-1

2.9

57.9

46.4

Minor BPS

53.7

0.2

81.48

39.8

Associated Gene:

Gene:

CHD9

Ensembl Gene ID:

ENSAPLG00000002826

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002906

6456112 - 6530331

74220