Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6506189_6528894_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6506189 - 6528894

Intron Length:

22706

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTTCTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TTTTGTTTACTT

Flanking Amino Acid:

ERSRITLQGQPPSSKKTDGS

Intron Amino Acid Position:

480

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

68.8

42.3

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

88.5

0.87

0.6

83.5

24.9

Minor 5ss

38.2

-1.3

3.1

49.2

47.1

Minor BPS

60.1

0.39

82.98

39.3

Associated Gene:

Gene:

CHD9

Ensembl Gene ID:

ENSAPLG00000002826

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002906

6456112 - 6530331

74220