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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6538635_6546034_R

Intron Information:

Intron Rank:
151290
Intron Class:
major
Intron Phase:
Intron Coordinates:
6538635 - 6546034
Intron Length:
7400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCAACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
0.9
71.8
39.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71
0.47
0.9
67.3
32.8
Minor 5ss
31.1
-2.2
2.6
35.7
40.4
Minor BPS
61.7
0.23
1.6
66.64
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028922
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037621
6537415 - 6546173
8759