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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6601038_6602553_F

Intron Information:

Intron Rank:
134681
Intron Class:
major
Intron Phase:
Intron Coordinates:
6601038 - 6602553
Intron Length:
1516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTATCTTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.4
0.73
0.8
81
36
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
77.9
0.74
1.2
75.99
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022422
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037207
6598825 - 6602835
4011