About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_674018_678749_F


Intron Information:

Intron Rank:
125681

Intron Class:
major

Intron Phase:

Intron Coordinates:
674018 - 678749

Intron Length:
4732

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACCATTT

5'SS Class:
major

3'SS Sequence:
TTAACATTCCCAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTAACAT

U12 Branch Point Sequence:
TCACCATTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71
0.49
1.2
72.7
39.6

Major BPS
71
0.52
1.1
77.7
35.3

Major PPT
71.6
0.49
1
62.4
43

Minor 5ss
48.3
-0.1
3.2
74
42.4

Minor BPS
64.4
0.45
1.6
71.36
40.1

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

673822 - 678862
5041