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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6770385_6790954_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6770385 - 6790954
Intron Length:
20570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGAG
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CATGCATTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.3
0.93
0.7
89.4
26.5
Minor 5ss
31.5
-2.1
3.4
38.6
40.8
Minor BPS
52.1
0.06
1.8
63.12
42.6

Associated Gene:

Gene:
TOX3
Ensembl Gene ID:
ENSAPLG00000003299
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003364
6770240 - 6833264
63025