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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6782217_6790954_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6782217 - 6790954
Intron Length:
8738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CATGCATTAAAA
Flanking Amino Acid:
SSEHVTAKHLFGNNNNYMNM
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
31.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.3
0.93
0.7
89.4
26.5
Minor 5ss
50.1
0.01
2.4
63.4
43.4
Minor BPS
52.1
0.06
1.8
63.12
42.6

Associated Gene:

Gene:
TOX3
Ensembl Gene ID:
ENSAPLG00000003299
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042899
6781375 - 6815479
34105