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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6811176_6812443_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6811176 - 6812443
Intron Length:
1268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TCTCTTTTAATA
Flanking Amino Acid:
WDSLGEEQKQVYKRKTEAAK
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
79.2
0.66
0.8
76.9
30.3
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
68.4
0.57
1.2
71.66
34.9

Associated Gene:

Gene:
TOX3
Ensembl Gene ID:
ENSAPLG00000003299
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042899
6781375 - 6815479
34105
ENSAPLT00000003364
6770240 - 6833264
63025
ENSAPLT00000003362
6742504 - 6833264
90761