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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6850210_6857080_F

Intron Information:

Intron Rank:
141112
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
6850210 - 6857080
Intron Length:
6871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAATCTTC
5'SS Class:
weak_major
3'SS Sequence:
ATTATGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TACCTTTTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
68.8
37.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.1
0.7
0.9
77.5
41
Minor 5ss
50.8
0.03
2.7
68.3
36.6
Minor BPS
54.5
0.14
1.2
59.31
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026002
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036397
6849656 - 6858018
8363