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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_6896342_6939854_F

Intron Information:

Intron Rank:
137328
Intron Class:
major
Intron Phase:
Intron Coordinates:
6896342 - 6939854
Intron Length:
43513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTAACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TGTTCTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
74.4
0.55
0.9
74.7
33.8
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
88.8
1.3
0.9
96.8
27.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023968
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027376
6896155 - 6981557
85403
ENSAPLT00000027161
6896155 - 7011580
115426