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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7123803_7127412_F

Intron Information:

Intron Rank:
145178
Intron Class:
major
Intron Phase:
Intron Coordinates:
7123803 - 7127412
Intron Length:
3610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028293
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034377
7123344 - 7128415
5072