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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7134515_7304996_F

Intron Information:

Intron Rank:
141185
Intron Class:
major
Intron Phase:
Intron Coordinates:
7134515 - 7304996
Intron Length:
170482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGCATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTTCTGATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.2
0.54
0.9
66.6
39.6
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
59
0.26
1.7
71.83
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026031
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047310
7134483 - 7305580
171098