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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7166_9434_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7166 - 9434
Intron Length:
2269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTATG
5'SS Class:
major
3'SS Sequence:
TTTGTAATTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTTGTAATT
Flanking Amino Acid:
LGNTLWIDPMVRVTRLSDLK
Intron Amino Acid Position:
980

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.5
41.9
Major BPS
100
1.24
0.5
100
0
Major PPT
68.8
0.42
1.1
65.9
43.6
Minor 5ss
38.1
-1.3
3.1
47.3
42.8
Minor BPS
59.2
0.37
2
79.54
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011417
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011896
3649 - 30288
26640