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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7310755_7332684_F

Intron Information:

Intron Rank:
141178
Intron Class:
major
Intron Phase:
Intron Coordinates:
7310755 - 7332684
Intron Length:
21930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ATTATTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
77.9
36.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
76.7
0.6
1
73.5
41.1
Minor 5ss
41.8
-0.9
2.8
55.5
35.9
Minor BPS
59.5
0.38
1.9
82.12
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026031
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019739
7158295 - 7392867
234573