Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7421388_7423968_F

Intron Information:

Intron Rank:

127526

Intron Class:

major

Intron Phase:

Intron Coordinates:

7421388 - 7423968

Intron Length:

2581

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGGCT

5'SS Class:

major

3'SS Sequence:

CCTTCAATATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

ATTTCCATATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.9

0.49

1.1

65.5

37.3

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

65.7

0.35

0.9

64.2

35.5

Minor 5ss

29.8

-2.3

3.9

47.1

48.5

Minor BPS

66.3

0.59

1.9

87.76

37.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018785

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018557

7421310 - 7424918

3609