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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7442941_7443883_F

Intron Information:

Intron Rank:
132060
Intron Class:
major
Intron Phase:
Intron Coordinates:
7442941 - 7443883
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CGTGCCATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTGAT
U12 Branch Point Sequence:
AGCTTCGTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
68.7
0.46
1.3
59.3
47.1
Major PPT
61.1
0.25
0.9
51.3
38
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
48.1
-0
2
64.83
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020948
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043036
7432364 - 7444145
11782