Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7498843_7499067_F

Intron Information:

Intron Rank:

127461

Intron Class:

major

Intron Phase:

Intron Coordinates:

7498843 - 7499067

Intron Length:

225

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTATGACTT

5'SS Class:

major

3'SS Sequence:

TTGTTTTAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAA

U12 Branch Point Sequence:

TTTGTTTTAAAC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

70.9

39.1

Major BPS

69.5

0.49

1.2

63.7

43.9

Major PPT

76.5

0.6

74.1

39.5

Minor 5ss

45.7

-0.5

3.1

65.8

39.4

Minor BPS

65.8

0.48

1.5

74.65

36.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018748

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023438

7497513 - 7499986

2474