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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7499258_7499402_F

Intron Information:

Intron Rank:
127462
Intron Class:
major
Intron Phase:
Intron Coordinates:
7499258 - 7499402
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTTCTCTCATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
35.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
84.5
0.78
0.8
77.2
37.1
Minor 5ss
43.1
-0.8
3
56.5
47.9
Minor BPS
49.7
-0
1.8
64.59
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018748
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023438
7497513 - 7499986
2474