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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7572281_7579202_F

Intron Information:

Intron Rank:
146162
Intron Class:
major
Intron Phase:
Intron Coordinates:
7572281 - 7579202
Intron Length:
6922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAAGA
5'SS Class:
major
3'SS Sequence:
TCCCATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
AATTTTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
66.3
39
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
76.8
0.6
0.8
70.9
33
Minor 5ss
33.1
-1.9
2.9
38
41.4
Minor BPS
59.7
0.38
1.6
75.69
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028728
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038771
7552764 - 7596908
44145