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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7579343_7596730_F

Intron Information:

Intron Rank:
146160
Intron Class:
major
Intron Phase:
Intron Coordinates:
7579343 - 7596730
Intron Length:
17388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTACTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
57.1
0.3
1.5
73.47
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028728
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038771
7552764 - 7596908
44145
ENSAPLT00000034172
7578666 - 7596908
18243