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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7637364_7698841_F

Intron Information:

Intron Rank:
137469
Intron Class:
major
Intron Phase:
Intron Coordinates:
7637364 - 7698841
Intron Length:
61478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTAAATTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATACTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
71.8
0.49
1
62
43.1
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
72.9
0.8
1.6
87.83
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024014
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048506
7637192 - 7698970
61779