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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7708565_7709214_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7708565 - 7709214
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
ACTTCAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTACTTCAATT
Flanking Amino Acid:
KQFCRTCNTQVHLHPKRQSH
Intron Amino Acid Position:
822

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
72.5
39.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
70.5
0.46
0.9
63.9
36.3
Minor 5ss
47.3
-0.3
2.9
64.8
40.8
Minor BPS
64
0.52
1.5
79.46
36.7

Associated Gene:

Gene:
CYLD
Ensembl Gene ID:
ENSAPLG00000012780
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032522
7706460 - 7724295
17836
ENSAPLT00000032335
7706460 - 7724295
17836
ENSAPLT00000017305
7706460 - 7724295
17836
ENSAPLT00000045048
7706460 - 7724295
17836
ENSAPLT00000013337
7707518 - 7724295
16778
ENSAPLT00000037849
7706460 - 7724295
17836