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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7713004_7714227_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7713004 - 7714227
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCATTTATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
AGTTCATTAACC
Flanking Amino Acid:
LRTEIVNPLRIYGYVCATKI
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
71.3
0.48
0.8
69.8
35
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
73.2
0.71
1.5
79.43
34.8

Associated Gene:

Gene:
CYLD
Ensembl Gene ID:
ENSAPLG00000012780
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032335
7706460 - 7724295
17836
ENSAPLT00000017305
7706460 - 7724295
17836
ENSAPLT00000013337
7707518 - 7724295
16778
ENSAPLT00000037849
7706460 - 7724295
17836
ENSAPLT00000032522
7706460 - 7724295
17836