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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7714351_7714948_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7714351 - 7714948
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATCT
Flanking Amino Acid:
NSCYLDSTLFCLFSFSSVLD
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.8
0.65
0.8
73.7
30.6
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
67.6
0.63
1.6
82.72
39.3

Associated Gene:

Gene:
CYLD
Ensembl Gene ID:
ENSAPLG00000012780
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032522
7706460 - 7724295
17836
ENSAPLT00000032335
7706460 - 7724295
17836
ENSAPLT00000017305
7706460 - 7724295
17836
ENSAPLT00000045048
7706460 - 7724295
17836
ENSAPLT00000013337
7707518 - 7724295
16778
ENSAPLT00000037849
7706460 - 7724295
17836