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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7715091_7715875_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7715091 - 7715875
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACCAAGC
5'SS Class:
major
3'SS Sequence:
AAAAAAATTTCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTCTTTTGAAAA
Flanking Amino Acid:
SNQIERCNSLAFGGYLSEVV
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
61
44.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
56.8
0.15
1.1
49.5
46.8
Minor 5ss
38.3
-1.3
3.1
52.9
43.8
Minor BPS
52.4
0.07
1.5
61.64
38.4

Associated Gene:

Gene:
CYLD
Ensembl Gene ID:
ENSAPLG00000012780
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032522
7706460 - 7724295
17836
ENSAPLT00000032335
7706460 - 7724295
17836
ENSAPLT00000017305
7706460 - 7724295
17836
ENSAPLT00000045048
7706460 - 7724295
17836
ENSAPLT00000013337
7707518 - 7724295
16778
ENSAPLT00000037849
7706460 - 7724295
17836