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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7718040_7719623_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7718040 - 7719623
Intron Length:
1584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAGA
5'SS Class:
major
3'SS Sequence:
TGATTCTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGATTCTTAACA
Flanking Amino Acid:
KPKPPWYIDEVAEDPAKSLT
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
74.5
0.55
1
70
40.1
Minor 5ss
31.7
-2.1
3.1
40.5
45.2
Minor BPS
79.9
0.93
1.1
80.93
34

Associated Gene:

Gene:
CYLD
Ensembl Gene ID:
ENSAPLG00000012780
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013337
7707518 - 7724295
16778
ENSAPLT00000045048
7706460 - 7724295
17836
ENSAPLT00000032335
7706460 - 7724295
17836
ENSAPLT00000017305
7706460 - 7724295
17836