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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7722825_7723788_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7722825 - 7723788
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGACACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TCCCCTCTGACA
Flanking Amino Acid:
TGIYFGVELLEEGRGQGFTD
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
61.7
0.26
0.9
59.1
36.3
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
49.6
-0
1.7
60.28
39.9

Associated Gene:

Gene:
CYLD
Ensembl Gene ID:
ENSAPLG00000012780
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013337
7707518 - 7724295
16778
ENSAPLT00000037849
7706460 - 7724295
17836
ENSAPLT00000032522
7706460 - 7724295
17836
ENSAPLT00000032335
7706460 - 7724295
17836
ENSAPLT00000017305
7706460 - 7724295
17836
ENSAPLT00000045048
7706460 - 7724295
17836