Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7739825_7742405_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7739825 - 7742405

Intron Length:

2581

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTGTGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TCCTTCTCATTT

Flanking Amino Acid:

IVEHHLSKYVMYKIIILQTG

Intron Amino Acid Position:

107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

79.4

28.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

74.3

0.55

73.5

41.9

Minor 5ss

32.1

-2

3.1

36.8

41.9

Minor BPS

49.6

0.05

1.8

66.98

44.7

Associated Gene:

Gene:

SNX20

Ensembl Gene ID:

ENSAPLG00000013062

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013595

7736968 - 7743411

6444