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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7804247_7805000_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7804247 - 7805000
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
CGTTATTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
AGCTCGTTATTT
Flanking Amino Acid:
IENYTSKFGPGSPPAAQKHD
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
74.8
0.62
1
67
39.8
Major PPT
77.6
0.62
0.9
69.5
41.4
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
48
-0
2.3
66.64
44.5

Associated Gene:

Gene:
NKD1
Ensembl Gene ID:
ENSAPLG00000013087
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037229
7802911 - 7908745
105835
ENSAPLT00000029031
7803672 - 7885902
82231
ENSAPLT00000013630
7803672 - 7908446
104775
ENSAPLT00000040912
7802672 - 7908745
106074
ENSAPLT00000037815
7802672 - 7850561
47890