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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7810781_7818828_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7810781 - 7818828
Intron Length:
8048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGAA
5'SS Class:
strong_major
3'SS Sequence:
AATCCAACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTGTTTCAATC
Flanking Amino Acid:
FDNNGRVTREDITSLLHTIY
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
77.6
32.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
62.4
0.28
0.9
57.4
37.8
Minor 5ss
35.6
-1.6
3.3
46.2
49.1
Minor BPS
51.8
0.04
1.6
62.32
37.9

Associated Gene:

Gene:
NKD1
Ensembl Gene ID:
ENSAPLG00000013087
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037815
7802672 - 7850561
47890
ENSAPLT00000029031
7803672 - 7885902
82231
ENSAPLT00000013630
7803672 - 7908446
104775
ENSAPLT00000040912
7802672 - 7908745
106074