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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7821575_7840823_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7821575 - 7840823
Intron Length:
19249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAG
5'SS Class:
major
3'SS Sequence:
TATATTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTATTCTTAAAT
Flanking Amino Acid:
TIGDEHFHLEVALPPEKTDG
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
72.5
38.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
86.2
0.81
0.8
81
36.1
Minor 5ss
41.2
-1
2.5
50.7
45.8
Minor BPS
79
0.99
1.2
90.06
33.2

Associated Gene:

Gene:
NKD1
Ensembl Gene ID:
ENSAPLG00000013087
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037815
7802672 - 7850561
47890
ENSAPLT00000037229
7802911 - 7908745
105835
ENSAPLT00000029031
7803672 - 7885902
82231
ENSAPLT00000013630
7803672 - 7908446
104775
ENSAPLT00000040912
7802672 - 7908745
106074