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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7840882_7850369_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7840882 - 7850369
Intron Length:
9488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATTAACT
Flanking Amino Acid:
AGESKFLKIKDLSGEGYRDT
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.1
72.7
44.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82.9
0.74
0.8
80
30.6
Minor 5ss
41.5
-0.9
2.9
59.6
44.8
Minor BPS
79.9
1.02
1.5
93.44
34.5

Associated Gene:

Gene:
NKD1
Ensembl Gene ID:
ENSAPLG00000013087
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037815
7802672 - 7850561
47890