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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7840882_7885791_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7840882 - 7885791
Intron Length:
44910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATTAACT
Flanking Amino Acid:
QKHLEKCEWRDLSGEGYRDT
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74.4
36
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82.9
0.74
0.8
80
30.6
Minor 5ss
33.3
-1.9
2.8
33.8
41.1
Minor BPS
79.9
1.02
1.5
93.44
34.5

Associated Gene:

Gene:
NKD1
Ensembl Gene ID:
ENSAPLG00000013087
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029031
7803672 - 7885902
82231