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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7840882_7897619_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7840882 - 7897619
Intron Length:
56738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATTAACT
Flanking Amino Acid:
KKNASVVRLEDLSGEGYRDT
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82.9
0.74
0.8
80
30.6
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
79.9
1.02
1.5
93.44
34.5

Associated Gene:

Gene:
NKD1
Ensembl Gene ID:
ENSAPLG00000013087
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013630
7803672 - 7908446
104775