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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_7897759_7908052_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7897759 - 7908052
Intron Length:
10294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTCAG
5'SS Class:
major
3'SS Sequence:
ATGTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTGTCCTCATGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
61.5
44.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
73.7
0.53
1
69.7
45.4
Minor 5ss
39.2
-1.2
2.8
41
45.3
Minor BPS
47.9
-0
2.1
67.69
48.8

Associated Gene:

Gene:
NKD1
Ensembl Gene ID:
ENSAPLG00000013087
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013630
7803672 - 7908446
104775