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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8082957_8083692_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8082957 - 8083692
Intron Length:
736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTTTCTCTAACA
Flanking Amino Acid:
EKEKRKRKVKDDKKKRDRDH
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
79.7
35.3
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
87.7
0.85
0.6
81.3
30.7
Minor 5ss
49
-0.1
2.5
65.8
45.4
Minor BPS
70.5
0.64
1.6
81.02
34.1

Associated Gene:

Gene:
BRD7
Ensembl Gene ID:
ENSAPLG00000013363
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013977
8082214 - 8096134
13921