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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8083823_8084213_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8083823 - 8084213
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCTTTTTGGTC
Flanking Amino Acid:
SLTSTLSKQEEVEQTPLQEA
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75.3
0.57
1
69.2
41.8
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
42.8
-0.5
3.4
63.75
37.1

Associated Gene:

Gene:
BRD7
Ensembl Gene ID:
ENSAPLG00000013363
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013977
8082214 - 8096134
13921