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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8084272_8085174_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8084272 - 8085174
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
CATATCTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATATCTTAACA
Flanking Amino Acid:
ALNQLMRQLQRKDPSSFFSF
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
100
1.24
0.5
100
0
Major PPT
71.4
0.48
1
65.9
39.3
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
70.8
0.65
1.3
72.94
38.7

Associated Gene:

Gene:
BRD7
Ensembl Gene ID:
ENSAPLG00000013363
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013977
8082214 - 8096134
13921