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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8086351_8087155_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8086351 - 8087155
Intron Length:
805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAAGTAT
5'SS Class:
major
3'SS Sequence:
ATTTTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTCACA
Flanking Amino Acid:
AFKTPNKDHKKKDKDLLEDK
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1
67.8
33.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.7
0.74
0.8
77.2
35.5
Minor 5ss
34
-1.8
3.5
45.9
44
Minor BPS
56.7
0.2
2
74.51
36.9

Associated Gene:

Gene:
BRD7
Ensembl Gene ID:
ENSAPLG00000013363
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013977
8082214 - 8096134
13921