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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8087280_8087949_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8087280 - 8087949
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
AATCTTATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
AAAATCTTATTT
Flanking Amino Acid:
KLTRRLANSQCEFERRKPDG
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
78.3
0.64
0.9
74.8
38.9
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
51.7
0.13
1.6
64.99
39.4

Associated Gene:

Gene:
BRD7
Ensembl Gene ID:
ENSAPLG00000013363
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013977
8082214 - 8096134
13921