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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8088967_8089345_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8088967 - 8089345
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCG|GCAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTTATTCATT
Flanking Amino Acid:
KEDKRNKVTPVTYLNYGPYS
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
1.2
85.4
29.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
72
0.49
0.9
71.6
39.1
Minor 5ss
25.5
-2.8
4.1
42.4
44.3
Minor BPS
52.4
0.16
2
76.18
41.1

Associated Gene:

Gene:
BRD7
Ensembl Gene ID:
ENSAPLG00000013363
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013977
8082214 - 8096134
13921