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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8089479_8090415_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8089479 - 8090415
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAACCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTTACCTTAACT
Flanking Amino Acid:
YGEDSNQGSFSIHEFLMKSQ
Intron Amino Acid Position:
501

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
76.1
35
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76
0.58
0.9
67
40
Minor 5ss
38.8
-1.3
2.8
48.7
47.1
Minor BPS
85.4
1.19
1.1
94.13
32.8

Associated Gene:

Gene:
BRD7
Ensembl Gene ID:
ENSAPLG00000013363
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013977
8082214 - 8096134
13921