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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8090528_8091697_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8090528 - 8091697
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTATTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CCTGCTTTAAAG
Flanking Amino Acid:
HSRSLRELEAPLEETEGTHE
Intron Amino Acid Position:
539

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
70.2
40.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.8
0.67
1
77.7
40.7
Minor 5ss
34.5
-1.8
3.5
48.2
47.3
Minor BPS
54.6
0.01
1.7
55.63
46

Associated Gene:

Gene:
BRD7
Ensembl Gene ID:
ENSAPLG00000013363
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013977
8082214 - 8096134
13921