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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8093719_8094676_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8093719 - 8094676
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGTACCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TACTTATTGACC
Flanking Amino Acid:
TEDSGIDLTDEFQEPKKTVT
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76.5
0.6
0.9
66.3
40.6
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
58.6
0.25
1.6
67.27
38.4

Associated Gene:

Gene:
BRD7
Ensembl Gene ID:
ENSAPLG00000013363
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013977
8082214 - 8096134
13921