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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_8103645_8105924_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8103645 - 8105924
Intron Length:
2280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAGTAT
5'SS Class:
major
3'SS Sequence:
TTCTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TGATTTTGTATT
Flanking Amino Acid:
WNLNLSVNNTRLFIEEPRIM
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1
65.2
36.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
31.2
-2.1
3.6
46
49.3
Minor BPS
47.7
-0.1
1.7
65.63
39.4

Associated Gene:

Gene:
ADCY7
Ensembl Gene ID:
ENSAPLG00000013887
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014536
8099053 - 8139830
40778
ENSAPLT00000030179
8099188 - 8139830
40643
ENSAPLT00000023170
8099242 - 8155874
56633
ENSAPLT00000022506
8098221 - 8154007
55787